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Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research
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Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research (2024)Cinco de Bio: A Low-Code Platform for Dom…Correction to ‘The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update’ (2022)Correction to ‘The Galaxy pla…GenPipes: an open-source framework for distributed and scalable genomic analyses (2019)GenPipes: an open-source fram…Challenges and recommendations to improve the installability and archival stability of omics computational tools (2019)Challenges and recommendation…Container-based bioinformatics with Pachyderm (2018)Container-based bioinformatic…Singularity: Scientific containers for mobility of compute (2017)Singularity: Scientific conta…Shifter: Containers for HPC (2017)Shifter: Containers for HPCNextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…KNIME for reproducible cross-domain analysis of life science data (2017)KNIME for reproducible cross-…A review of bioinformatic pipeline frameworks (2016)A review of bioinformatic pip…Yabi: An online research environment for grid, high performance and cloud computing (2012)Yabi: An online research envi…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Loose Programming with PROPHETS (2012)Loose Programming with PROPHE…Bpipe: a tool for running and managing bioinformatics pipelines (2012)Bpipe: a tool for running and…Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)Galaxy: A Web‐Based Genome An…KNIME - the Konstanz information miner (2009)KNIME - the Konstanz informat…Bio-jETI: a framework for semantics-based service composition (2009)Bio-jETI: a framework for sem…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis (2016)Investigating reproducibility and tracking provenance – A genomic workflow case study (2017)Playing Super Mario 64 increases hippocampal grey matter in older adults (2017)Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Galaxy: A platform for interactive large-scale genome analysis (2005)Taverna: a tool for building and running workflows of services (2006)Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data (2013)Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud (2015)Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases (2016)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)snakePipes: facilitating flexible, scalable and integrative epigenomic analysis (2019)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Reproducibility: A tragedy of errors (2016)The nf-core framework for community-curated bioinformatics pipelines (2020)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)KNIME: The Konstanz Information Miner (2008)Eleven quick tips for data cleaning and feature engineering (2022)Recent trends of green human resource management: Text mining and network analysis (2022)Sustainable Marketing and the Role of Social Media: An Experimental Study Using Natural Language Processing (NLP) (2023)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Big data in biology: The hope and present-day challenges in it (2020)Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline (2014)Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives (2014)Towards reproducible computational drug discovery (2020)Blending Big Data Analytics: Review on Challenges and a Recent Study (2019)Methods included (2022)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)
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References

  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2017Singularity: Scientific containers for mobility of compute2,734 cited
  • 2010Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists1,430 cited
  • 2009KNIME - the Konstanz information miner1,190 cited
  • 2016A review of bioinformatic pipeline frameworks250 cited
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  • 2017KNIME for reproducible cross-domain analysis of life science data197 cited
  • 2012Bpipe: a tool for running and managing bioinformatics pipelines159 cited
  • 2012Yabi: An online research environment for grid, high performance and cloud computing136 cited
  • 2022Correction to ‘The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update’118 cited
  • 2017Shifter: Containers for HPC110 cited
  • 2019Challenges and recommendations to improve the installability and archival stability of omics computational tools90 cited
  • 2009Bio-jETI: a framework for semantics-based service composition75 cited
  • 2012Loose Programming with PROPHETS

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63 cited
  • 2018Container-based bioinformatics with Pachyderm56 cited
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