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Streamline automated biomedical discoveries with agentic bioinformatics
6 references·0 citing·26 second hop
Streamline automated biomedical discoveries with agentic bioinformatics (2025)Streamline automated biomedical discoveri…An AI Agent for Fully Automated Multi‐Omic Analyses (2024)An AI Agent for Fully Automat…Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Reproducible, scalable, and s…A Survey on Bias and Fairness in Machine Learning (2021)A Survey on Bias and Fairness…The global landscape of AI ethics guidelines (2019)The global landscape of AI et…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement (2009)Preferred Reporting Items for Systematic Reviews and Meta-Analyses: The PRISMA Statement (2009)Preferred reporting items for systematic reviews and meta-analyses: the PRISMA Statement. (2009)Principles alone cannot guarantee ethical AI (2019)The Ethics of AI Ethics: An Evaluation of Guidelines (2020)Ethics of AI in Education: Towards a Community-Wide Framework (2021)Fairness through awareness (2012)Semantics derived automatically from language corpora contain human-like biases (2017)Gender Shades: Intersectional Accuracy Disparities in Commercial Gender Classification (2018)Algorithmic Bias in Education (2021)Connecting the dots in trustworthy Artificial Intelligence: From AI principles, ethics, and key requirements to responsible AI systems and regulation (2023)Fairness and Bias in Artificial Intelligence: A Brief Survey of Sources, Impacts, and Mitigation Strategies (2023)Nextflow enables reproducible computational workflows (2017)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The nf-core framework for community-curated bioinformatics pipelines (2020)Spatial machine learning: new opportunities for regional science (2021)Empowering bioinformatics communities with Nextflow and nf-core (2025)Taverna: a tool for building and running workflows of services (2006)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Ten Simple Rules for Reproducible Computational Research (2013)Leveraging large language models for data analysis automation (2025)BioMaster: Multi-agent system for automated bioinformatics analysis workflow (2026)Empowering AI data scientists using a multi-agent LLM framework with self-evolving capabilities for autonomous, tool-aware biomedical data analyses (2026)
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References

  • 2019The global landscape of AI ethics guidelines6,172 cited
  • 2021A Survey on Bias and Fairness in Machine Learning5,798 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2021Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers228 cited
  • 2024An AI Agent for Fully Automated Multi‐Omic Analyses89 cited

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