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Dagmar Waltemath · Study
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Author
Dagmar Waltemath
22 works
· latest 2022
· 5 institutions
cluster: provisional
ORCID 0000-0002-5886-5563
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21
Citations
1,149
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Most cited in this library
Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language
2011 · 257 citations
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
2014 · 170 citations
Minimum Information About a Simulation Experiment (MIASE)
2011 · 168 citations
Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative
2015 · 116 citations
Combining computational models, semantic annotations and simulation experiments in a graph database
2015 · 53 citations
Works
22 shown
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
Briefings in Bioinformatics
·
2022
·
12 authors
·
Open access
32
citations
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2021
·
9 authors
·
Open access
17
citations
OMEX metadata specification (version 1.2)
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2021
·
6 authors
·
Open access
11
citations
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2020
·
19 authors
·
Open access
38
citations
Open modeling and exchange (OMEX) metadata specification version 1.0
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2020
·
5 authors
·
Open access
12
citations
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2018
·
10 authors
·
Open access
37
citations
A brief history of COMBINE
Winter Simulation Conference
·
2017
·
9 authors
·
other
10
citations
The JWS online simulation database
Bioinformatics
·
2017
·
4 authors
·
Open access
36
citations
SED-ML web tools: generate, modify and export standard-compliant simulation studies
Bioinformatics
·
2016
·
4 authors
·
Open access
9
citations
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine
IEEE Transactions on Biomedical Engineering
·
2016
·
2 authors
·
Open access
49
citations
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2015
·
5 authors
·
Open access
11
citations
Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative
Frontiers in Bioengineering and Biotechnology
·
2015
·
12 authors
·
review
·
Open access
116
citations
Combining computational models, semantic annotations and simulation experiments in a graph database
Database
·
2015
·
3 authors
·
Open access
53
citations
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
BMC Bioinformatics
·
2014
·
18 authors
·
Open access
170
citations
A call for virtual experiments: Accelerating the scientific process
Progress in Biophysics and Molecular Biology
·
2014
·
3 authors
·
Open access
38
citations
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
Standards in Genomic Sciences
·
2014
·
21 authors
·
Open access
29
citations
Improving the reuse of computational models through version control
Bioinformatics
·
2013
·
5 authors
·
Open access
23
citations
Reproducibility of Model-Based Results in Systems Biology
Springer eBooks
·
2013
·
4 authors
·
chapter
10
citations
Considerations of graph-based concepts to manage of computational biology models and associated simulations.
·
2012
·
4 authors
10
citations
Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language
BMC Systems Biology
·
2011
·
11 authors
·
Open access
257
citations
Minimum Information About a Simulation Experiment (MIASE)
PLoS Computational Biology
·
2011
·
27 authors
·
Open access
168
citations
Simulation Experiment Description Markup Language (SED-ML) : Level 1 Version 1
Nature Precedings
·
2011
·
4 authors
·
preprint
·
Open access
13
citations