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The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud
2 references·16 citing·30 second hop
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Taverna workflow suite: designing and…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Taverna: a tool for building and running workflows of services (2006)Taverna: a tool for building …FAIR Computational Workflows (2019)FAIR Computational WorkflowsThe future of scientific workflows (2017)The future of scientific work…Scientific workflows: Past, present and future (2017)Scientific workflows: Past, p…Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Scientific workflows for comp…BioContainers: an open-source and community-driven framework for software standardization (2017)BioContainers: an open-source…A characterization of workflow management systems for extreme-scale applications (2017)A characterization of workflo…Tools and techniques for computational reproducibility (2016)Tools and techniques for comp…systemPipeR: NGS workflow and report generation environment (2016)systemPipeR: NGS workflow and…SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis (2016)SUSHI: an exquisite recipe fo…Scientific Workflows (2016)Scientific WorkflowsScientific workflows for bibliometrics (2016)Scientific workflows for bibl…M odel DB (2016)M odel DBA review of bioinformatic pipeline frameworks (2016)A review of bioinformatic pip…Using a suite of ontologies for preserving workflow-centric research objects (2015)Using a suite of ontologies f…AiiDA: automated interactive infrastructure and database for computational science (2015)AiiDA: automated interactive …Cytoscape: the network visualization tool for GenomeSpace workflows (2014)Cytoscape: the network visual…An object-oriented scripting interface to a legacy electronic structure code (2002)The Open Provenance Model core specification (v1.1) (2010)AiiDA 1.0, a scalable computational infrastructure for automated reproducible workflows and data provenance (2020)Materials Cloud, a platform for open computational science (2020)Materials Cloud, a platform for open computational science (2020)The SAGE Glossary of the Social and Behavioral Sciences (2009)Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace (2016)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Nextflow enables reproducible computational workflows (2017)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Characterization of scientific workflows (2008)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)KNIME: The Konstanz Information Miner (2008)Application of Artificial Intelligence in COVID-19 Pandemic: Bibliometric Analysis (2021)Trends and statistics of artificial intelligence and radiomics research in Radiology, Nuclear Medicine, and Medical Imaging: bibliometric analysis (2023)Bibliometrix: Science Mapping Analysis with R Biblioshiny Based on Web of Science in Applied Linguistics (2024)Snakemake—a scalable bioinformatics workflow engine (2012)snakePipes: facilitating flexible, scalable and integrative epigenomic analysis (2019)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline (2014)Galaxy: A platform for interactive large-scale genome analysis (2005)PhenoMeNal: processing and analysis of metabolomics data in the cloud (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Towards FAIR principles for research software (2019)Towards reproducible computational drug discovery (2020)Characterizing and profiling scientific workflows (2012)WfCommons: A framework for enabling scientific workflow research and development (2021)Empowering bioinformatics communities with Nextflow and nf-core (2025)
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References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2006Taverna: a tool for building and running workflows of services944 cited

Cited by

  • 2017BioContainers: an open-source and community-driven framework for software standardization798 cited
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  • 2016A review of bioinformatic pipeline frameworks250 cited
  • 2016Scientific workflows for bibliometrics215 cited
  • 2014Cytoscape: the network visualization tool for GenomeSpace workflows207 cited
  • 2016systemPipeR: NGS workflow and report generation environment195 cited
  • 2017The future of scientific workflows182 cited
  • 2017Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities181 cited
  • 2019FAIR Computational Workflows171 cited
  • 2016Tools and techniques for computational reproducibility169 cited
  • 2016M odel DB157 cited
  • 2017A characterization of workflow management systems for extreme-scale applications149 cited
  • 2016SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

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141 cited
  • 2015Using a suite of ontologies for preserving workflow-centric research objects131 cited
  • 2017Scientific workflows: Past, present and future131 cited
  • 2016Scientific Workflows106 cited