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Open is Not Enough. Let's Take the Next Step: An Integrated, Community-Driven Computing Platform for Neuroscience
1 references·16 citing·45 second hop
Open is Not Enough. Let's Take the Next Step: An Integrated, Community-Driven Computing Platform for Neuroscience (2012)Open is Not Enough. 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(2020)What emotions might be like in other animals (2021)Ten Simple Rules for Reproducible Computational Research (2013)An introduction to Docker for reproducible research (2015)Consensus-based guidance for conducting and reporting multi-analyst studies (2021)The five pillars of computational reproducibility: bioinformatics and beyond (2023)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python (2011)Snakemake—a scalable bioinformatics workflow engine (2012)Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging (2022)Spyglass: a framework for reproducible and shareable neuroscience research (2024)Efficient, Distributed and Interactive Neuroimaging Data Analysis using the LONI Pipeline (2009)An Open Resource for Non-human Primate Imaging (2018)Changes in global and thalamic brain connectivity in LSD-induced altered states of consciousness are attributable to the 5-HT2A receptor (2018)Bioconductor: open software development for computational biology and bioinformatics (2004)1,500 scientists lift the lid on reproducibility (2016)Elevating the RRE Framework for Geospatial Analysis with Visual Programming Platforms: An Exploration with Geospatial Analytics Extension for KNIME (2024)Nine quick tips for open meta-analyses (2024)Reproducible research policies and software/data management in scientific computing journals: a survey, discussion, and perspectives (2025)Promoting an open research culture (2015)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)Accessible computing platforms democratize neuroimaging data analysis (2024)The secret lives of experiments: Methods reporting in the fMRI literature (2012)ITK: enabling reproducible research and open science (2014)A Novel, Open Access Method to Assess Sleep Duration Using a Wrist-Worn Accelerometer (2015)
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References

  • 2012The case for open computer programs537 cited

Cited by

  • 2018Towards an unconscious neural reinforcement intervention for common fears159 cited
  • 2019Multivoxel pattern analysis reveals dissociations between subjective fear and its physiological correlates128 cited
  • 2020Ten simple rules for writing Dockerfiles for reproducible data science107 cited
  • 2023Containers for computational reproducibility70 cited
  • 2016Reproducibility in Computational Neuroscience Models and Simulations70 cited
  • 2024Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging66 cited
  • 2023QuNex—An integrative platform for reproducible neuroimaging analytics52 cited
  • 2019Computational and Informatic Advances for Reproducible Data Analysis in Neuroimaging51 cited
  • 2022Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis51 cited
  • 2015Improving functional magnetic resonance imaging reproducibility47 cited
  • 2016To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery44 cited
  • 2016Using Make for Reproducible and Parallel Neuroimaging Workflow and Quality-Assurance26 cited
  • 2014A framework for streamlining research workflow in neuroscience and psychology

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22 cited
  • 2016Neurophysiological analytics for all! Free open-source software tools for documenting, analyzing, visualizing, and sharing using electronic notebooks14 cited
  • 2017Gentoo Linux for Neuroscience - a replicable, flexible, scalable, rolling-release environment that provides direct access to development software13 cited
  • 2017Pypes: Workflows for Processing Multimodal Neuroimaging Data11 cited