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Tools and data services registry: a community effort to document bioinformatics resources

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References

2004Bioconductor: open software development for computational biology and bioinformatics12,180 cited
2011BioMart: driving a paradigm change in biological data management316 cited
2010BioCatalogue: a universal catalogue of web services for the life sciences217 cited
2000Biopython200 cited
2006Open software for biologists: from famine to feast199 cited

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2019Recommendations for the packaging and containerizing of bioinformatics software50 cited
2020On the lifetime of bioinformatics web services50 cited
2018Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained47 cited
2023Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems41 cited
2018Automated workflow composition in mass spectrometry-based proteomics41 cited

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2021

An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action

41 cited

2018Recommendations for the packaging and containerizing of bioinformatics software38 cited

2015BioShaDock: a community driven bioinformatics shared Docker-based tools registry37 cited

2020An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action36 cited

2017The EBI search engine: EBI search as a service—making biological data accessible for all33 cited

2017Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis27 cited

2021Bioimage analysis workflows: community resources to navigate through a complex ecosystem22 cited