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Reproducible Research Using Biomodels
15 references·1 citing·37 second hop
Reproducible Research Using Biomodels (2018)Reproducible Research Using BiomodelsReproducibility vs. Replicability: A Brief History of a Confused Terminology (2018)Reproducibility vs. Replicabi…What does research reproducibility mean? (2016)What does research reproducib…Tools and techniques for computational reproducibility (2016)Tools and techniques for comp…Enhancing reproducibility for computational methods (2016)Enhancing reproducibility for…1,500 scientists lift the lid on reproducibility (2016)1,500 scientists lift the lid…Ten Simple Rules for Reproducible Computational Research (2013)Ten Simple Rules for Reproduc…Reproducible Research in Computational Science (2011)Reproducible Research in Comp…Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Reproducible computational bi…Minimum Information About a Simulation Experiment (MIASE) (2011)Minimum Information About a S…Case studies in reproducibility (2011)Case studies in reproducibili…Accessible Reproducible Research (2010)Accessible Reproducible Resea…Reproducible research and Biostatistics (2009)Reproducible research and Bio…Electronic documents give reproducible research a new meaning (1992)Electronic documents give rep…The Logic of Scientific Discovery. (1959)The Logic of Scientific Disco…The Logic of Scientific Discovery. (1959)The Logic of Scientific Disco…ENCORE: a practical implementation to improve reproducibility and transparency of computational research (2024)ENCORE: a practical implement…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Good enough practices in scientific computing. (2017)Preferred reporting items for systematic reviews and meta‐analyses in ecology and evolutionary biology: a PRISMA extension (2021)WaveLab and Reproducible Research (1995)Statistical Analyses and Reproducible Research (2007)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing (2011)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)Policy: NIH plans to enhance reproducibility (2014)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)A solution to minimum sample size for regressions (2020)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)Promoting an open research culture (2015)Researching Mental Health Disorders in the Era of Social Media: Systematic Review (2017)The future of scientific workflows (2017)FAIR Computational Workflows (2019)Increasing value and reducing waste in research design, conduct, and analysis (2014)Reproducibility in Science (2014)An introduction to Docker for reproducible research (2015)COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)Proceedings of the 2017 Winter Simulation Conference (2017)Reproducibility in systems biology modelling (2021)A manifesto for reproducible science (2017)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)The nf-core framework for community-curated bioinformatics pipelines (2020)Journal of Computational Neuroscience (2013)Open science, reproducibility, and transparency in ecology (2018)Reproducibility in machine learning for health research: Still a ways to go (2021)The diffusion of innovations (1983)Modernization, cultural change, and democracy the human development sequence (2005)Lateral Collinearity and Misleading Results in Variance-Based SEM: An Illustration and Recommendations (2012)Grounded theory research: Procedures, canons, and evaluative criteria (1990)Confirmation Bias: A Ubiquitous Phenomenon in Many Guises (1998)Seeking Qualitative Rigor in Inductive Research (2012)
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References

  • 1959The Logic of Scientific Discovery.7,499 cited
  • 20161,500 scientists lift the lid on reproducibility4,200 cited
  • 1959The Logic of Scientific Discovery.2,826 cited
  • 2011Reproducible Research in Computational Science1,446 cited
  • 2016What does research reproducibility mean?1,291 cited
  • 2013Ten Simple Rules for Reproducible Computational Research875 cited
  • 2018Reproducibility vs. Replicability: A Brief History of a Confused Terminology426 cited
  • 2016Enhancing reproducibility for computational methods413 cited
  • 2010Accessible Reproducible Research308 cited
  • 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language257 cited
  • 2009Reproducible research and Biostatistics237 cited
  • 1992Electronic documents give reproducible research a new meaning212 cited
  • 2016Tools and techniques for computational reproducibility169 cited
  • 2011Minimum Information About a Simulation Experiment (MIASE)168 cited
  • 2011Case studies in reproducibility77 cited

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  • 2024

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ENCORE: a practical implementation to improve reproducibility and transparency of computational research
11 cited