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Exploration of Workflow Management Systems Emerging Features from Users Perspectives
9 references·2 citing·37 second hop
Exploration of Workflow Management Systems Emerging Features from Users Perspectives (2019)Exploration of Workflow Management System…CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language (2019)CWL-Airflow: a lightweight pi…Container-based bioinformatics with Pachyderm (2018)Container-based bioinformatic…The future of scientific workflows (2017)The future of scientific work…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…Scientific Workflows (2016)Scientific WorkflowsA global reference for human genetic variation (2015)A global reference for human …Scientific Workflow: A Survey and Research Directions (2008)Scientific Workflow: A Survey…Scientific workflow management and the Kepler system (2005)Scientific workflow managemen…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…Accelerating Scientific Workflows on HPC Platforms with In Situ Processing (2022)Accelerating Scientific Workf…TITAN: A knowledge-based platform for Big Data workflow management (2021)TITAN: A knowledge-based plat…YAWL: yet another workflow language (2004)Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline (2010)Elastic Business Process Management: State of the art and open challenges for BPM in the cloud (2014)A characterization of workflow management systems for extreme-scale applications (2017)Workflow Management (2002)Workflow Patterns (2003)Taverna: lessons in creating a workflow environment for the life sciences (2005)Provenance and scientific workflows (2008)FireWorks: a dynamic workflow system designed for high‐throughput applications (2015)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Snakemake—a scalable bioinformatics workflow engine (2012)Reproducibility: A tragedy of errors (2016)The nf-core framework for community-curated bioinformatics pipelines (2020)Sustainable data analysis with Snakemake (2021)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)Galaxy: A platform for interactive large-scale genome analysis (2005)Characterizing and profiling scientific workflows (2012)FAIR Computational Workflows (2019)Empowering bioinformatics communities with Nextflow and nf-core (2025)Singularity: Scientific containers for mobility of compute (2017)Toil enables reproducible, open source, big biomedical data analyses (2017)Tibanna: software for scalable execution of portable pipelines on the cloud (2019)Design considerations for workflow management systems use in production genomics research and the clinic (2021)Simplifying the development of portable, scalable, and reproducible workflows (2021)KNIME - the Konstanz information miner (2009)2013 IEEE International Conference on Big Data (2013)Ancient gene flow from early modern humans into Eastern Neanderthals (2016)A high-coverage Neandertal genome from Vindija Cave in Croatia (2017)International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci (2019)Taverna: a tool for building and running workflows of services (2006)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Ten Simple Rules for Reproducible Computational Research (2013)Distributed simulation: state-of-the-art and potential for operational research (2018)WfCommons: A framework for enabling scientific workflow research and development (2021)Globus automation services: Research process automation across the space–time continuum (2023)SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines (2019)Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research (2024)
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References

  • 2015A global reference for human genetic variation18,217 cited
  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2005Scientific workflow management and the Kepler system1,681 cited
  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2008Scientific Workflow: A Survey and Research Directions243 cited
  • 2017The future of scientific workflows182 cited
  • 2016Scientific Workflows106 cited
  • 2019CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language65 cited
  • 2018Container-based bioinformatics with Pachyderm56 cited

Cited by

  • 2021TITAN: A knowledge-based platform for Big Data workflow management27 cited
  • 2022Accelerating Scientific Workflows on HPC Platforms with In Situ Processing12 cited

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