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The democratization of bioinformatics: A software engineering perspective
5 references·0 citing·25 second hop
The democratization of bioinformatics: A software engineering perspective (2020)The democratization of bioinformatics: A …Practical Computational Reproducibility in the Life Sciences (2017)Practical Computational Repro…Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses (2017)Dugong: a Docker image, based…Bridging the Chasm (2017)Bridging the ChasmBioContainers: an open-source and community-driven framework for software standardization (2017)BioContainers: an open-source…Accelerating in silico research with workflows: A lesson in Simplicity (2013)Accelerating in silico resear…Taverna: a tool for building and running workflows of services (2006)Bringing Web 2.0 to bioinformatics (2008)Scientific Workflow: A Survey and Research Directions (2008)Engineering bioinformatics: building reliability, performance and productivity into bioinformatics software (2015)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Towards FAIR principles for research software (2019)Towards reproducible computational drug discovery (2020)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Design Patterns: Elements of Reusable Object-Oriented Software (1994)The Economics of Climate Change (2007)The Economics of Climate Change: The Stern Review (2007)Gütekriterien und Handlungsempfehlungen für die Entwicklung von Forschungssoftware in der Kommunikations- und Medienwissenschaft (2021)Reliability in Software Engineering Qualitative Research Through Inter-Coder Agreement (2022)State of the Practice for Lattice Boltzmann Method Software (2023)Solving reproducibility (2015)The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows (2017)Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments (2019)The pegi3s Bioinformatics Docker Images Project (2021)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)1,500 scientists lift the lid on reproducibility (2016)Jupyter Notebooks – a publishing format for reproducible computational workflows (2016)Streamlining data-intensive biology with workflow systems (2021)The five pillars of computational reproducibility: bioinformatics and beyond (2023)Empowering bioinformatics communities with Nextflow and nf-core (2025)
this work references cited by second hop

References

  • 2017BioContainers: an open-source and community-driven framework for software standardization798 cited
  • 2017Practical Computational Reproducibility in the Life Sciences158 cited
  • 2017Bridging the Chasm65 cited
  • 2013Accelerating in silico research with workflows: A lesson in Simplicity30 cited
  • 2017Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses20 cited

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