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The pegi3s Bioinformatics Docker Images Project · Study

WorkThe pegi3s Bioinformatics Docker Images Project

Hugo López-Fernández2021

Work2021

The pegi3s Bioinformatics Docker Images Project

Hugo López-Fernández · Pedro Costa Ferreira · Miguel Reboiro‐Jato · Cristina P. Vieira · Jorge Vieira

17 citations·0/0 files stored·Lecture notes in networks and systems

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Scientific Computing and Data Management Genomics and Phylogenetic Studies Genetics, Bioinformatics, and Biomedical Research

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References

2017BioContainers: an open-source and community-driven framework for software standardization 2020Ten simple rules for writing Dockerfiles for reproducible data science 2015Bioboxes: standardised containers for interchangeable bioinformatics software 2017The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows 2019Workflow systems turn raw data into scientific knowledge 2019Recommendations for the packaging and containerizing of bioinformatics software 2015BioShaDock: a community driven bioinformatics shared Docker-based tools registry 2017Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses

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2021The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocolsarticle · 4 shared references 2021BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containersarticle · 4 shared references 2019Building Containerized Workflows Using the BioDepot-Workflow-Builderarticle · 4 shared references 2021Simplifying the development of portable, scalable, and reproducible workflowsarticle · 4 shared references 2019Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environmentsarticle · 4 shared references 2017Building containerized workflows using the BioDepot-workflow-builder (Bwb)preprint · 4 shared references

Details

Year2021

Typeother

Published2021-08-27

VenueLecture notes in networks and systems

ISSN-L2367-3370

Languageen

Citations17

Files0 public / 0

ShelfScientific Computing and Data Management

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doi10.1007/978-3-030-86258-9_4

openalex_workW3198187693

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