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The pegi3s Bioinformatics Docker Images Project
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The pegi3s Bioinformatics Docker Images Project (2021)The pegi3s Bioinformatics Docker Images P…Ten simple rules for writing Dockerfiles for reproducible data science (2020)Ten simple rules for writing …Workflow systems turn raw data into scientific knowledge (2019)Workflow systems turn raw dat…Recommendations for the packaging and containerizing of bioinformatics software (2019)Recommendations for the packa…The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows (2017)The Dockstore: enabling modul…Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses (2017)Dugong: a Docker image, based…BioContainers: an open-source and community-driven framework for software standardization (2017)BioContainers: an open-source…BioShaDock: a community driven bioinformatics shared Docker-based tools registry (2015)BioShaDock: a community drive…Bioboxes: standardised containers for interchangeable bioinformatics software (2015)Bioboxes: standardised contai…Creating a bioinformatics nation (2002)An introduction to Docker for reproducible research (2015)The impact of Docker containers on the performance of genomic pipelines (2015)Building Containerized Workflows Using the BioDepot-Workflow-Builder (2019)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Open science is a research accelerator (2011)Dissemination of scientific software with Galaxy ToolShed (2014)Use of application containers and workflows for genomic data analysis (2016)Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis (2017)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Towards FAIR principles for research software (2019)Towards reproducible computational drug discovery (2020)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Solving reproducibility (2015)Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments (2019)The democratization of bioinformatics: A software engineering perspective (2020)1,500 scientists lift the lid on reproducibility (2016)Singularity: Scientific containers for mobility of compute (2017)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)Scalable Data Analysis in Proteomics and Metabolomics Using BioContainers and Workflows Engines (2019)The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols (2021)Containers in Bioinformatics (2022)Ten Simple Rules for Reproducible Computational Research (2013)Consensus-based guidance for conducting and reporting multi-analyst studies (2021)The five pillars of computational reproducibility: bioinformatics and beyond (2023)CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language (2019)Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data (2019)Containers for computational reproducibility (2023)Challenge to scientists: does your ten-year-old code still run? (2020)Using prototyping to choose a bioinformatics workflow management system (2021)
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References

  • 2017BioContainers: an open-source and community-driven framework for software standardization798 cited
  • 2020Ten simple rules for writing Dockerfiles for reproducible data science107 cited
  • 2015Bioboxes: standardised containers for interchangeable bioinformatics software85 cited
  • 2017The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows83 cited
  • 2019Workflow systems turn raw data into scientific knowledge72 cited
  • 2019Recommendations for the packaging and containerizing of bioinformatics software50 cited
  • 2015BioShaDock: a community driven bioinformatics shared Docker-based tools registry37 cited
  • 2017Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses20 cited

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