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Galaxy: A Decade of Realising CWFR Concepts
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Galaxy: A Decade of Realising CWFR Concepts (2022)Galaxy: A Decade of Realising CWFR Concep…biotoolsSchema: a formalized schema for bioinformatics software description (2021)biotoolsSchema: a formalized …The bio.tools registry of software tools and data resources for the life sciences (2019)The bio.tools registry of sof…Community curation of bioinformatics software and data resources (2019)Community curation of bioinfo…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for acces…Singularity: Scientific containers for mobility of compute (2017)Singularity: Scientific conta…Scientific workflows: Past, present and future (2017)Scientific workflows: Past, p…Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis (2017)Robust Cross-Platform Workflo…BioContainers: an open-source and community-driven framework for software standardization (2017)BioContainers: an open-source…Biocompute Objects—A Step towards Evaluation and Validation of Biomedical Scientific Computations (2016)Biocompute Objects—A Step tow…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Guidance framework to apply best practices in ecological data analysis: lessons learned from building Galaxy-Ecology (2025)Guidance framework to apply b…Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Snakemake—a scalable bioinformatics workflow engine (2012)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Enabling precision medicine via standard communication of HTS provenance, analysis, and results (2018)Bioinformatics tools developed to support BioCompute Objects (2021)The role of metadata in reproducible computational research (2021)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Scientific workflow management and the Kepler system (2005)Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv (2019)StreamFlow: Cross-Breeding Cloud With HPC (2020)Streamlining data-intensive biology with workflow systems (2021)Nextflow enables reproducible computational workflows (2017)High-Performance Modelling and Simulation for Big Data Applications (2019)Data Integration Techniques for Cross-Platform Analytics (2020)Perspectives on automated composition of workflows in the life sciences (2021)Galaxy: A platform for interactive large-scale genome analysis (2005)The nf-core framework for community-curated bioinformatics pipelines (2020)Sustainable data analysis with Snakemake (2021)Tools and data services registry: a community effort to document bioinformatics resources (2015)Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems (2023)Ten quick tips for building FAIR workflows (2023)WorkflowHub: a registry for computational workflows (2025)Towards FAIR principles for research software (2019)Nine best practices for research software registries and repositories (2022)Towards reproducible computational drug discovery (2020)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)APE: A Command-Line Tool and API for Automated Workflow Composition (2020)APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry (2021)
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References

  • 2018The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update3,659 cited
  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2017Singularity: Scientific containers for mobility of compute2,734 cited
  • 2017BioContainers: an open-source and community-driven framework for software standardization798 cited
  • 2017Scientific workflows: Past, present and future131 cited
  • 2019The bio.tools registry of software tools and data resources for the life sciences88 cited
  • 2016Biocompute Objects—A Step towards Evaluation and Validation of Biomedical Scientific Computations46 cited
  • 2017Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis27 cited
  • 2021biotoolsSchema: a formalized schema for bioinformatics software description20 cited
  • 2019Community curation of bioinformatics software and data resources17 cited

Cited by

  • 2025Guidance framework to apply best practices in ecological data analysis: lessons learned from building Galaxy-Ecology9 cited

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