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Reproducibility of studies on text mining for citation screening in systematic reviews: Evaluation and checklist
16 references·16 citing·40 second hopsampled
Reproducibility of studies on text mining for citation screening in systematic reviews: Evaluation and checklist (2017)Reproducibility of studies on text mining…SWIFT-Review: a text-mining workbench for systematic review (2016)SWIFT-Review: a text-mining w…Using text mining for study identification in systematic reviews: a systematic review of current approaches (2015)Using text mining for study i…Erratum to: Using text mining for study identification in systematic reviews: a systematic review of current approaches (2015)Erratum to: Using text mining…Reducing systematic review workload through certainty-based screening (2014)Reducing systematic review wo…Ten Simple Rules for Reproducible Computational Research (2013)Ten Simple Rules for Reproduc…Pinpointing needles in giant haystacks: use of text mining to reduce impractical screening workload in extremely large scoping reviews (2013)Pinpointing needles in giant …Reproducible Research in Computational Science (2011)Reproducible Research in Comp…Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Reproducible computational bi…Semi-automated screening of biomedical citations for systematic reviews (2010)Semi-automated screening of b…Accessible Reproducible Research (2010)Accessible Reproducible Resea…Reproducible Research in Computational Harmonic Analysis (2008)Reproducible Research in Comp…Guest Editors' Introduction: Reproducible Research (2008)Guest Editors' Introduction: …A Visual Text Mining approach for Systematic Reviews (2007)A Visual Text Mining approach…Reducing Workload in Systematic Review Preparation Using Automated Citation Classification (2005)Reducing Workload in Systemat…Bioconductor: open software development for computational biology and bioinformatics (2004)Bioconductor: open software d…Replication, Replication (1995)Replication, ReplicationData extraction methods for systematic review (semi)automation: Update of a living systematic review (2025)Data extraction methods for s…ASReview LAB v.2: Open-source text screening with multiple agents and a crowd of experts (2025)ASReview LAB v.2: Open-source…Reproducibility and Data Storage for Active Learning-Aided Systematic Reviews (2024)Reproducibility and Data Stor…Simulation-based Active Learning for Systematic Reviews: A Scoping Review of Literature (2023)Simulation-based Active Learn…Data extraction methods for systematic review (semi)automation: Update of a living systematic review (2023)Data extraction methods for s…Search strategy formulation for systematic reviews: Issues, challenges and opportunities (2022)Search strategy formulation f…From FAIR data to fair data use: Methodological data fairness in health-related social media research (2021)From FAIR data to fair data u…Data extraction methods for systematic review (semi)automation: A living systematic review (2021)Data extraction methods for s…Data extraction methods for systematic review (semi)automation: A living review protocol (2020)Data extraction methods for s…Still moving toward automation of the systematic review process: a summary of discussions at the third meeting of the International Collaboration for Automation of Systematic Reviews (ICASR) (2019)Still moving toward automatio…Performance and Usability of Machine Learning for Screening in Systematic Reviews: A Comparative Evaluation of Three Tools (2019)Performance and Usability of …A question of trust: can we build an evidence base to gain trust in systematic review automation technologies? (2019)A question of trust: can we b…Three Dimensions of Reproducibility in Natural Language Processing (2018)Three Dimensions of Reproduci…Software support for environmental evidence synthesis (2018)Software support for environm…Improving Systematic Literature Review with Automation and Bibliometrics (2018)Improving Systematic Literatu…A shared latent space matrix factorisation method for recommending new trial evidence for systematic review updates (2018)A shared latent space matrix …The American Heritage Word Frequency Book (1973)Developing Optimal Search Strategies for Detecting Clinically Sound Studies in MEDLINE (1994)Systematic reviews : synthesis of best evidence for health care decisions (1998)Rayyan—a web and mobile app for systematic reviews (2016)An open source machine learning framework for efficient and transparent systematic reviews (2021)Publish your computer code: it is good enough (2010)Increasing value and reducing waste in research design, conduct, and analysis (2014)Reproducibility in Science (2014)An introduction to Docker for reproducible research (2015)Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Believe it or not: how much can we rely on published data on potential drug targets? (2011)Good enough practices in scientific computing (2017)Preferred reporting items for systematic reviews and meta‐analyses in ecology and evolutionary biology: a PRISMA extension (2021)Formulating Questions and Locating Primary Studies for Inclusion in Systematic Reviews (1997)Reporting of systematic reviews of micronutrients and health: a critical appraisal (2009)WaveLab and Reproducible Research (1995)Making scientific computations reproducible (2000)Statistical Analyses and Reproducible Research (2007)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)A Coefficient of Agreement for Nominal Scales (1960)The Measurement of Observer Agreement for Categorical Data (1977)Case Study Research: Design and Methods (1984)Critical Appraisal of Mixed Methods Studies (2013)A systematic review of open government data initiatives (2015)Automation of systematic literature reviews: A systematic literature review (2021)Systematic Reviews: Rationale for systematic reviews (1994)Seventy-Five Trials and Eleven Systematic Reviews a Day: How Will We Ever Keep Up? (2010)An Introduction to Systematic Reviews (2013)The PRISMA 2020 statement: an updated guideline for reporting systematic reviews (2021)The PRISMA 2020 statement: an updated guideline for reporting systematic reviews (2021)Creating a bioinformatics nation (2002)A Draft Sequence of the Neandertal Genome (2010)Two new Later Stone Age sites from the Final Pleistocene in the Falémé Valley, eastern Senegal (2024)Private archives and public needs. (1983)Designing Social Inquiry (1994)Recommendations for Increasing Replicability in Psychology (2013)Facts Are More Important Than Novelty (2014)American Economic Review (2019)
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References

  • 2004Bioconductor: open software development for computational biology and bioinformatics12,180 cited
  • 2011Reproducible Research in Computational Science1,484 cited
  • 2013Ten Simple Rules for Reproducible Computational Research935 cited
  • 2015Using text mining for study identification in systematic reviews: a systematic review of current approaches691 cited
  • 1995Replication, Replication456 cited
  • 2005Reducing Workload in Systematic Review Preparation Using Automated Citation Classification410 cited
  • 2010Semi-automated screening of biomedical citations for systematic reviews356 cited
  • 2015Erratum to: Using text mining for study identification in systematic reviews: a systematic review of current approaches353 cited
  • 2007A Visual Text Mining approach for Systematic Reviews334 cited
  • 2010Accessible Reproducible Research308 cited
  • 2008Reproducible Research in Computational Harmonic Analysis274 cited
  • 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language257 cited
  • 2016SWIFT-Review: a text-mining workbench for systematic review207 cited
  • 2014Reducing systematic review workload through certainty-based screening200 cited
  • 2013

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Pinpointing needles in giant haystacks: use of text mining to reduce impractical screening workload in extremely large scoping reviews
186 cited
  • 2008Guest Editors' Introduction: Reproducible Research132 cited
  • Cited by

    • 2019A question of trust: can we build an evidence base to gain trust in systematic review automation technologies?179 cited
    • 2022Search strategy formulation for systematic reviews: Issues, challenges and opportunities161 cited
    • 2019Performance and Usability of Machine Learning for Screening in Systematic Reviews: A Comparative Evaluation of Three Tools153 cited
    • 2019Still moving toward automation of the systematic review process: a summary of discussions at the third meeting of the International Collaboration for Automation of Systematic Reviews (ICASR)111 cited
    • 2021Data extraction methods for systematic review (semi)automation: A living systematic review106 cited
    • 2018Software support for environmental evidence synthesis51 cited
    • 2018Improving Systematic Literature Review with Automation and Bibliometrics51 cited
    • 2021From FAIR data to fair data use: Methodological data fairness in health-related social media research49 cited
    • 2023Data extraction methods for systematic review (semi)automation: Update of a living systematic review44 cited
    • 2018Three Dimensions of Reproducibility in Natural Language Processing43 cited
    • 2020Data extraction methods for systematic review (semi)automation: A living review protocol30 cited
    • 2025Data extraction methods for systematic review (semi)automation: Update of a living systematic review26 cited
    • 2025ASReview LAB v.2: Open-source text screening with multiple agents and a crowd of experts20 cited
    • 2024Reproducibility and Data Storage for Active Learning-Aided Systematic Reviews18 cited
    • 2018A shared latent space matrix factorisation method for recommending new trial evidence for systematic review updates18 cited
    • 2023Simulation-based Active Learning for Systematic Reviews: A Scoping Review of Literature18 cited