SZodixStudyAcademic Library
DashboardShelvesOpen accessMy libraryInboxNotesWriteLearnAlerts
More
Ask your libraryNotificationsQuick citeReview
Study · an open academic library·Metadata from OpenAlex (CC0)·Shelves·OpenAlex metadata, de-duplicated
APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry
13 references·0 citing·40 second hop
APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry (2021)APE in the Wild: Automated Exploration of…APE: A Command-Line Tool and API for Automated Workflow Composition (2020)APE: A Command-Line Tool and …Community curation of bioinformatics software and data resources (2019)Community curation of bioinfo…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for acces…Automated workflow composition in mass spectrometry-based proteomics (2018)Automated workflow compositio…Scientific workflows: Past, present and future (2017)Scientific workflows: Past, p…Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking (2017)Lessons Learned: Recommendati…Tools and data services registry: a community effort to document bioinformatics resources (2015)Tools and data services regis…Loose Programming with PROPHETS (2012)Loose Programming with PROPHE…Synthesis-Based Loose Programming (2010)Synthesis-Based Loose Program…SADI, SHARE, and the in silico scientific method (2010)SADI, SHARE, and the in silic…Magallanes: a web services discovery and automatic workflow composition tool (2009)Magallanes: a web services di…KNIME - the Konstanz information miner (2009)KNIME - the Konstanz informat…Workflows For E-Science: Scientific Workflows For Grids (2007)Workflows For E-Science: Scie…Semantics-based composition of EMBOSS services (2011)Higher-Order Process Modeling: Product-Lining, Variability Modeling and Beyond (2013)A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research (2022)DECLARE: Full Support for Loosely-Structured Processes (2007)Bio-jETI: a framework for semantics-based service composition (2009)Constraint-Guided Workflow Composition Based on the EDAM Ontology (2010)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)BioCatalogue: a universal catalogue of web services for the life sciences (2010)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications (2011)Bioconductor: open software development for computational biology and bioinformatics (2004)BioMart: driving a paradigm change in biological data management (2011)Four simple recommendations to encourage best practices in research software (2017)Ten simple rules for making research software more robust (2017)The bio.tools registry of software tools and data resources for the life sciences (2019)Scientific workflow management and the Kepler system (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv (2019)StreamFlow: Cross-Breeding Cloud With HPC (2020)Streamlining data-intensive biology with workflow systems (2021)The big challenges of big data (2013)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Nextflow enables reproducible computational workflows (2017)Perspectives on automated composition of workflows in the life sciences (2021)WfBench: Automated Generation of Scientific Workflow Benchmarks (2022)Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability (2023)KNIME: The Konstanz Information Miner (2008)Loose programming of GIS workflows with geo‐analytical concepts (2020)biotoolsSchema: a formalized schema for bioinformatics software description (2021)Galaxy: A platform for interactive large-scale genome analysis (2005)Singularity: Scientific containers for mobility of compute (2017)The nf-core framework for community-curated bioinformatics pipelines (2020)Sustainable data analysis with Snakemake (2021)Sustainable data analysis with Snakemake (2021)Examining the Challenges of Scientific Workflows (2007)The design and realisation of the Virtual Research Environment for social sharing of workflows (2008)A characterization of workflow management systems for extreme-scale applications (2017)Blending Big Data Analytics: Review on Challenges and a Recent Study (2019)Towards reproducible computational drug discovery (2020)Methods included (2022)
this work references cited by second hop

References

  • 2018The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update3,659 cited
  • 2009KNIME - the Konstanz information miner1,190 cited
  • 2007Workflows For E-Science: Scientific Workflows For Grids514 cited
  • 2015Tools and data services registry: a community effort to document bioinformatics resources153 cited
  • 2017Scientific workflows: Past, present and future131 cited
  • 2012Loose Programming with PROPHETS63 cited
  • 2010Synthesis-Based Loose Programming57 cited
  • 2010SADI, SHARE, and the in silico scientific method41 cited
  • 2018Automated workflow composition in mass spectrometry-based proteomics41 cited
  • 2017Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking40 cited
  • 2009Magallanes: a web services discovery and automatic workflow composition tool31 cited
  • 2019Community curation of bioinformatics software and data resources17 cited
  • 2020APE: A Command-Line Tool and API for Automated Workflow Composition12 cited

Cited by

No citing works inside the corpus for this window.

Only edges whose both ends are imported exist here. Widen the year window, or show the whole map. Back to the work